PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000791G0820
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 205aa    MW: 22183 Da    PI: 9.3952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000791G0820genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-19654153
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                     ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  +
  PH01000791G0820  6 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 54
                     59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.68E-32666No hitNo description
PROSITE profilePS5103221.878764IPR001471AP2/ERF domain
SMARTSM003808.9E-39770IPR001471AP2/ERF domain
PfamPF008476.9E-12751IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-20765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-33765IPR001471AP2/ERF domain
PRINTSPR003671.2E-10819IPR001471AP2/ERF domain
PRINTSPR003671.2E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVQPKKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAARAYDEA AVLMSGRNAK  60
TNFPVQRSTT GDLAPAAGRD IRSNGGSSSS TSNLSQILSA KLRKCCKAPS PSLTCLRLDP  120
EKSHIGIWQK RAGARADSNW VMTVELNKEA ASCDAAAQST SAATASPATM DDEERIALQM  180
IEELLSRSSP ASPSHGEDEG SFVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16666465ATERF1
3gcc_A3e-16666465ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627194.11e-130PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI331e-77WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0E0JX061e-132A0A0E0JX06_ORYPU; Uncharacterized protein
STRINGBGIOSGA007748-PA1e-131(Oryza sativa Indica Group)
STRINGORGLA02G0073000.11e-131(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37173876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-60ERF family protein